{"id":424,"date":"2022-10-02T14:06:35","date_gmt":"2022-10-02T06:06:35","guid":{"rendered":"http:\/\/xn--805-6f0f4a6598f.fun\/?p=424"},"modified":"2024-05-22T16:04:06","modified_gmt":"2024-05-22T08:04:06","slug":"424","status":"publish","type":"post","link":"https:\/\/stu.chcmu.asia\/index.php\/2022\/10\/02\/424\/","title":{"rendered":"Fastqc\u4e0b\u8f7d\u4e0e\u5b89\u88c5"},"content":{"rendered":"<p><a href=\"https:\/\/www.bioinformatics.babraham.ac.uk\/projects\/fastqc\/\">Fastqc \u5b98\u7f51<\/a><br \/>\n\u4e00\u3001\u5b89\u88c5<br \/>\n1 conda \u5b89\u88c5 Fastqc<\/p>\n<pre><code class=\"language-bash\">conda install fastqc<\/code><\/pre>\n<p>2 sudo \u6743\u9650\u76f4\u63a5\u5b89\u88c5<\/p>\n<pre><code class=\"language-bash\">sudo apt install fastqc<\/code><\/pre>\n<p>3 \u4e0b\u8f7d\u5b89\u88c5<br \/>\n<a href=\"https:\/\/www.bioinformatics.babraham.ac.uk\/projects\/fastqc\/fastqc_v0.11.9.zip\">Windows\/Liunx \u4e0b\u8f7d\u94fe\u63a5<\/a><br \/>\n<a href=\"https:\/\/www.bioinformatics.babraham.ac.uk\/projects\/fastqc\/fastqc_v0.11.9.dmg\">Mac \u4e0b\u8f7d\u94fe\u63a5<\/a><\/p>\n<p>\u4e8c\u3001\u4f7f\u7528<\/p>\n<pre><code class=\"language-bash\">fastqc -o outdir -t 16 fastq1 fastq2 ...<\/code><\/pre>\n<p>\u4e3b\u8981\u53c2\u6570\uff1a<\/p>\n<pre><code class=\"language-bash\">-o --outdir # FastQC \u751f\u6210\u7684\u62a5\u544a\u6587\u4ef6\u7684\u50a8\u5b58\u8def\u5f84\uff0c\u751f\u6210\u7684\u62a5\u544a\u7684\u6587\u4ef6\u540d\u662f\u6839\u636e\u8f93\u5165\u6765\u5b9a\u7684\n-t --threads # \u9009\u62e9\u7a0b\u5e8f\u8fd0\u884c\u7684\u7ebf\u7a0b\u6570\uff0c\n-q --quiet # \u5b89\u9759\u8fd0\u884c\u6a21\u5f0f\uff0c\u4e00\u822c\u4e0d\u9009\u8fd9\u4e2a\u9009\u9879\u7684\u65f6\u5019\uff0c\u7a0b\u5e8f\u4f1a\u5b9e\u65f6\u62a5\u544a\u8fd0\u884c\u7684\u72b6\u51b5<\/code><\/pre>\n<p>\u8fd0\u884c\u7ed3\u675f\u540e\u751f\u6210\u4e24\u4e2a\u6587\u4ef6\u4e00\u4e2a.html\u7f51\u9875\u6587\u4ef6\uff0c\u4e00\u4e2a\u662f.zip\u538b\u7f29\u6587\u4ef6\u3002<br \/>\n\u4f7f\u7528\u6d4f\u89c8\u5668\u6253\u5f00html\u6587\u4ef6\uff1a<br \/>\n<img decoding=\"async\" src=\"https:\/\/pic1.zhimg.com\/877967dad063658ee72cf567b4d69ab4_r.jpg\" alt=\"Fastqc_html\u56fe\u7247\" \/><\/p>\n<p><a href=\"https:\/\/blog.csdn.net\/gateswell\/article\/details\/78858579?ops_request_misc=%25257B%252522request%25255Fid%252522%25253A%252522161293795016780261955828%252522%25252C%252522scm%252522%25253A%25252220140713.130102334.pc%25255Fall.%252522%25257D&amp;request_id=161293795016780261955828&amp;biz_id=0&amp;utm_medium=distribute.pc_search_result.none-task-blog-2~all~first_rank_v2~rank_v29-1-78858579.pc_search_result_cache&amp;utm_term=fastqc%25E7%25BB%2593%25E6%259E%259C%25E8%25A7%25A3%25E8%25AF%25BB\">Fastqc\u7ed3\u679c\u89e3\u8bfb<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Fastqc \u5b98\u7f51 \u4e00\u3001\u5b89\u88c5 1 conda \u5b89\u88c5 Fastqc conda install fastqc 2 [&hellip;]<\/p>\n","protected":false},"author":2,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[6,30],"tags":[],"class_list":["post-424","post","type-post","status-publish","format-standard","hentry","category-bioinformatics","category-biosoft"],"_links":{"self":[{"href":"https:\/\/stu.chcmu.asia\/index.php\/wp-json\/wp\/v2\/posts\/424","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/stu.chcmu.asia\/index.php\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/stu.chcmu.asia\/index.php\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/stu.chcmu.asia\/index.php\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/stu.chcmu.asia\/index.php\/wp-json\/wp\/v2\/comments?post=424"}],"version-history":[{"count":1,"href":"https:\/\/stu.chcmu.asia\/index.php\/wp-json\/wp\/v2\/posts\/424\/revisions"}],"predecessor-version":[{"id":1640,"href":"https:\/\/stu.chcmu.asia\/index.php\/wp-json\/wp\/v2\/posts\/424\/revisions\/1640"}],"wp:attachment":[{"href":"https:\/\/stu.chcmu.asia\/index.php\/wp-json\/wp\/v2\/media?parent=424"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/stu.chcmu.asia\/index.php\/wp-json\/wp\/v2\/categories?post=424"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/stu.chcmu.asia\/index.php\/wp-json\/wp\/v2\/tags?post=424"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}